Student Publications

2024

Bast, A., Fruengel, R., De Kock, C., & Oberlaender, M. (2024). Network-neuron interactions underlying sensory responses of layer 5 pyramidal tract neurons in barrel cortex. PLOS Computational Biology, 20(4): e1011468. https://doi.org/10.1371/journal.pcbi.1011468.

Koch, D., Nandan, A. P., Ramesan, G., & Koseska, A. (2024). Biological computations: Limitations of attractor-based formalisms and the need for transients. Biochemical and Biophysical Research Communications, 720: 150069. https://doi.org/10.1016/j.bbrc.2024.150069.

Kotowska, A. M., Hiramatsu, F., Alexander, M. R., Scurr, D. J., Lightfoot, J. W., & Chauhan, V. M. (2024). Molecular surface chemistry defines nematode development, identity and behaviour. bioRxiv. https://doi.org/10.1101/2024.04.24.590549.

Shirdhankar, R. N., & Malkemper, E. P. (2024). Cognitive maps and the magnetic sense in vertebrates. Current Opinion in Neurobiology, 86: 102880. https://doi.org/10.1016/j.conb.2024.102880

2023

Bast, A., Fruengel, R., de Kock, C.P.J., and Oberlaender, M. (2023). Interpretable modelling of input-output computations in cortex. bioRxiv, 555249. https://doi.org/10.1101/2023.08.29.555249.

Hiramatsu, F., & Lightfoot, J. W. (2023). Kin-recognition and predation shape collective behaviors in the cannibalistic nematode Pristionchus pacificus. PLoS Genetics, 19(12): e1011056. https://doi.org/10.1371/journal.pgen.1011056.

Vinopal, S., Dupraz, S., Alfadil, E., Pietralla, T., Bendre, S., Stiess, M., … Bradke, F. (2023). Centrosomal microtubule nucleation regulates radial migration of projection neurons independently of polarization in the developing brain. Neuron, 111(8). https://doi.org/10.1016/j.neuron.2023.01.020

2022

Bonnard, E., Liu, J., Zjacic, N., Alvarez, L., & Scholz, M. (2022). Automatically tracking feeding behavior in populations of foraging C. elegans. eLife, 11: e77252. https://doi.org/10.7554/eLife.77252.

Bonnard, E., Liu, J., Zjacic, N., Alvarez, L., & Scholz, M. (2022). Automatically tracking feeding behavior in populations of foraging worms. bioRxiv: the preprint server for biology. https://doi.org/10.1101/2022.01.20.477072.

Bohmbach, K., Masala, N., Schönhense, E.M., Hill, K., Haubrich, A.N., Zimmer, A., Opitz, T., Beck, H., Henneberger, C. (2022) An astrocytic signaling loop for frequency-dependent control of dendritic integration 2 and spatial learning. Nat Commun 13, 7932. https://doi.org/10.1038/s41467-022-35620-8

Eren, GnGz; Roca, M; Han, Z; Lightfoot, JW (2022). Genomic integration of transgenes using UV irradiation in Pristionchus pacificus. microPublication Biology  https://doi.org/10.17912%2Fmicropub.biology.000576

Flores Valle, A., Honnef, R., & Seelig, J. D. (2022). Automated long-term two-photon imaging in head-fixed walking Drosophila. Journal of Neuroscience Methods, 368: 109432. https://doi.org/10.1016/j.jneumeth.2021.109432.

Flores Valle, A., & Seelig, J. D. (2022). A place learning assay for tethered walking Drosophila. Journal of Neuroscience Methods, 378: 109657. https://doi.org/10.1016/j.jneumeth.2022.109657.

Flores Valle, A., & Seelig, J. D. (2022). Axial motion estimation and correction for simultaneous multi-plane two-photon calcium imaging. Biomedical Optics Express, 13(4), 2035-2049. https://doi.org/10.1364/BOE.445775.

Lin, P., LI, C., Flores Valle, A., Wang, Z., Zhang, M., Cheng, R., et al. (2022). Tilt-angle stimulated Raman projection tomography. Optics Express, 30(20), 37112-37123. https://doi.org/10.1364/OE.470527.

Luxem, K., Mocellin, P., Fuhrmann, F., Kürsch, J., Miller, S. R., Palop, J. J., Remy, S., & Bauer, P. (2022). Identifying behavioral structure from deep variational embeddings of animal motion. Communications biology, 5(1), 1267. https://doi.org/10.1038/s42003-022-04080-7

Masala, N., Pofahl, M., Haubrich A.N., Nikbakht, N., Bohmbach, K., Henneberger, C., Golcuk, K., Kelly, T., Beck, H. (2022) Degraded dendritic input feature detection underlies spatial memory deficits in epilepsy. Brain, 146(6), 2399–2417, https://doi.org/10.1093/brain/awac455

Monsees, A., Voit, K.-M., Wallace, D. J., Sawinski, J., Leks, E., Scheffler, K., et al. (2022). Estimation of skeletal kinematics in freely moving rodents. Nature Methods. https://doi.org/10.1038/s41592-022-01634-9.

Royero, P., Quatraccioni, A., Fruengel, R., Silva, M. H., Bast, A., Ulas, T., et al. (2022). Circuit-selective cell-autonomous regulation of inhibition in pyramidal neurons by Ste20-like kinase. Cell Reports, 41(10): 111757. https://doi.org/10.1016/j.celrep.2022.111757.

Schelski, M., & Bradke, F. (2022). Microtubule retrograde flow retains neuronal polarization in a fluctuating state. Science advances, 8(44), eabo2336. https://doi.org/10.1126/sciadv.abo2336

 

2021

de Kock, C. P., Pie, J., Pieneman, A. W., Mease, R. A., Bast, A., Guest, J. M., Oberlaender, M., Mansvelder, H. D., & Sakmann, B. (2021). High-frequency burst spiking in layer 5 thick-tufted pyramids of rat primary somatosensory cortex encodes exploratory touch. Communications Biology, 4(1). https://doi.org/10.1038/s42003-021-02241-8

Flores Valle, A., Gonçalves, P. J., & Seelig, J. D. (2021). Integration of sleep homeostasis and navigation in drosophila. PLOS Computational Biology, 17(7). https://doi.org/10.1371/journal.pcbi.1009088

Hückesfeld, S., Schlegel, P., Miroschnikow, A., Schoofs, A., Zinke, I., Haubrich, A. N., Schneider-Mizell, C. M., Truman, J. W., Fetter, R. D., Cardona, A., & Pankratz, M. J. (2021). Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in drosophila. ELife, 10. https://doi.org/10.7554/elife.65745

Iyer, A. A., & Briggman, K. L. (2021). Amphibian behavioral diversity offers insights into evolutionary neurobiology. Current Opinion in Neurobiology, 71, 19–28. https://doi.org/10.1016/j.conb.2021.07.015

Komorowska-Müller, J. A., Rana, T., Olabiyi, B. F., Zimmer, A., & Schmöle, A.-C. (2021). Cannabinoid receptor 2 alters social memory and microglial activity in an age-dependent manner. Molecules, 26(19), 5984. https://doi.org/10.3390/molecules26195984

Komorowska-Müller, J. A., Ravichandran, K. A., Zimmer, A., & Schürmann, B. (2021). Cannabinoid receptor 2 deletion influences social memory and synaptic architecture in the hippocampus. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-96285-9

Minge, D., Domingos, C., Unichenko, P., Behringer, C., Pauletti, A., Anders, S., Herde, M. K., Delekate, A., Gulakova, P., Schoch, S., Petzold, G. C., & Henneberger, C. (2021). Heterogeneity and development of fine astrocyte morphology captured by diffraction-limited microscopy. Frontiers in Cellular Neuroscience, 15. https://doi.org/10.3389/fncel.2021.669280

Mocellin, P., & Mikulovic, S. (2021). The role of the medial septum—associated networks in controlling locomotion and motivation to move. Frontiers in Neural Circuits, 15. https://doi.org/10.3389/fncir.2021.699798

Pofahl, M., Nikbakht, N., Haubrich, A. N., Nguyen, T. M., Masala, N., Distler, F. J., Braganza, O., Macke, J. H., Ewell, L. A., Golcuk, K., & Beck, H. (2021). Synchronous activity patterns in the dentate gyrus during immobility. ELife, 10. https://doi.org/10.7554/elife.65786

Reusch, N., Ravichandran, K. A., Olabiyi, B. F., Komorowska‐Müller, J. A., Hansen, J. N., Ulas, T., Beyer, M., Zimmer, A., & Schmöle, A. C. (2021). Cannabinoid receptor 2 is necessary to induce toll‐like receptor‐mediated microglial activation. Glia. https://doi.org/10.1002/glia.24089

Schmidt, S., Pothmann, L., Müller‐Komorowska, D., Opitz, T., Soares da Silva, P., & Beck, H. (2021). Complex effects of eslicarbazepine on inhibitory micro networks in chronic experimental epilepsy. Epilepsia, 62(2), 542–556. https://doi.org/10.1111/epi.16808

Schoch, S., Quatraccioni, A., Robens, B. K., Maresch, R., van Loo, K. M. J., Cases-Cunillera, S., Kelly, T., Opitz, T., Borger, V., Dietrich, D., Pitsch, J., Beck, H., & Becker, A. J. (2021). STE20-like kinase is critical for inhibitory synapse maintenance and its deficiency confers a developmental dendritopathy. The Journal of Neuroscience, 41(39), 8111–8125. https://doi.org/10.1523/jneurosci.0352-21.2021

Speiser, A., Müller, L.-R., Hoess, P., Matti, U., Obara, C. J., Legant, W. R., Kreshuk, A., Macke, J. H., Ries, J., & Turaga, S. C. (2021). Deep learning enables fast and dense single-molecule localization with high accuracy. Nature Methods, 18(9), 1082–1090. https://doi.org/10.1038/s41592-021-01236-x

2020

Bertan, F., Wischhof, L., Sosulina, L., Mittag, M., Dalügge, D., Fornarelli, A., Gardoni, F., Marcello, E., Di Luca, M., Fuhrmann, M., Remy, S., Bano, D., & Nicotera, P. (2020). Loss of ryanodine receptor 2 impairs neuronal activity-dependent remodeling of dendritic spines and triggers compensatory neuronal hyperexcitability. Cell Death & Differentiation, 27(12), 3354–3373. https://doi.org/10.1038/s41418-020-0584-2

Braganza, O., Mueller-Komorowska, D., Kelly, T., & Beck, H. (2020). Quantitative properties of a feedback circuit predict frequency-dependent pattern separation. ELife, 9. https://doi.org/10.7554/elife.53148

Egger, R., Narayanan, R. T., Guest, J. M., Bast, A., Udvary, D., Messore, L. F., Das, S., de Kock, C. P. J., & Oberlaender, M. (2020). Cortical output is gated by horizontally projecting neurons in the deep layers. Neuron, 105(1). https://doi.org/10.1016/j.neuron.2019.10.011

Herde, M. K., Bohmbach, K., Domingos, C., Vana, N., Komorowska-Müller, J. A., Passlick, S., Schwarz, I., Jackson, C. J., Dietrich, D., Schwarz, M. K., & Henneberger, C. (2020). Local efficacy of glutamate uptake decreases with synapse size. Cell Reports, 32(12), 108182. https://doi.org/10.1016/j.celrep.2020.108182

Komorowska-Müller, J. A., & Schmöle, A.-C. (2020). CB2 receptor in microglia: The guardian of self-control. International Journal of Molecular Sciences, 22(1), 19. https://doi.org/10.3390/ijms22010019

Müller, F. E., Schade, S. K., Cherkas, V., Stopper, L., Breithausen, B., Minge, D., Varbanov, H., Wahl‐Schott, C., Antoniuk, S., Domingos, C., Compan, V., Kirchhoff, F., Henneberger, C., Ponimaskin, E., & Zeug, A. (2020). Serotonin receptor 4 regulates hippocampal astrocyte morphology and function. Glia, 69(4), 872–889. https://doi.org/10.1002/glia.23933

Müller-Komorowska, D., Opitz, T., Elzoheiry, S., Schweizer, M., Ambrad Giovannetti, E., & Beck, H. (2020). Nonspecific expression in limited excitatory cell populations in interneuron-targeting Cre-driver lines can have large functional effects. Frontiers in Neural Circuits, 14. https://doi.org/10.3389/fncir.2020.00016

2019

Flores Valle, A., & Seelig, J. D. (2019). Two-photon bessel beam tomography for fast volume imaging. Optics Express, 27(9), 12147. https://doi.org/10.1364/oe.27.012147

2018

Berens, P., Freeman, J., Deneux, T., Chenkov, N., McColgan, T., Speiser, A., Macke, J. H., Turaga, S. C., Mineault, P., Rupprecht, P., Gerhard, S., Friedrich, R. W., Friedrich, J., Paninski, L., Pachitariu, M., Harris, K. D., Bolte, B., Machado, T. A., Ringach, D., … Bethge, M. (2018). Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology, 14(5). https://doi.org/10.1371/journal.pcbi.1006157

Dalügge, D., & Remy, S. (2018). Human cortical dendrites: Stretched to perform better? Cell, 175(3), 635–637. https://doi.org/10.1016/j.cell.2018.09.052

Guest, J. M., Seetharama, M. M., Wendel, E. S., Strick, P. L., & Oberlaender, M. (2018). 3D reconstruction and standardization of the rat facial nucleus for precise mapping of Vibrissal Motor Networks. Neuroscience, 368, 171–186. https://doi.org/10.1016/j.neuroscience.2017.09.031

2017

Rojas-Piloni, G., Guest, J. M., Egger, R., Johnson, A. S., Sakmann, B., & Oberlaender, M. (2017). Relationships between structure, in vivo function and long-range axonal target of cortical pyramidal tract neurons. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-00971-0

Schelski, M., & Bradke, F. (2017). Neuronal polarization: From spatiotemporal signaling to cytoskeletal dynamics. Molecular and Cellular Neuroscience, 84, 11–28. https://doi.org/10.1016/j.mcn.2017.03.008

2016

Justus, D., Dalügge, D., Bothe, S., Fuhrmann, F., Hannes, C., Kaneko, H., Friedrichs, D., Sosulina, L., Schwarz, I., Elliott, D. A., Schoch, S., Bradke, F., Schwarz, M. K., & Remy, S. (2016). Glutamatergic synaptic integration of locomotion speed via septoentorhinal projections. Nature Neuroscience, 20(1), 16–19. https://doi.org/10.1038/nn.4447